Transcription profiling by array of Drosophila mutant for TIM-MJD
Microarray 1-colour mRNA
Organism:
Drosophila melanogaster
Array Design(s):
Affymetrix GeneChip Drosophila Genome [DrosGenome1]
Publication:
- Kadener S, Villella A, Kula E, Palm K, Pyza E et al. (2006) Neurotoxic protein expression reveals connections between the circadian clock and mating behavior in Drosophila.
Analysis Methods
Normalization | RMA using oligo version 1.36.1. arrayNormalization.R. |
Differential expression statistics | Moderated t-statistics computed with limma version 3.28.21. Independent filtering performed using genefilter version 1.54.2, with gene variances as filter statistic. p-values adjusted using Benjamini & Hochberg (1995) FDR correction. By default, significant differential expression called if adjusted p <= 0.05. |
Gene Set Enrichment Analysis | Fisher (non-directional), FDR < 0.05 using piano version 1.10.2. |
GEO: GSE2422